J3_5ND9_011

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5ND9|1|A|A|2545, 5ND9|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND9_011 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1389

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5ND9|1|A|C|2544
5ND9|1|A|A|2545
5ND9|1|A|U|2546
5ND9|1|A|C|2547
*
5ND9|1|A|G|2572
5ND9|1|A|U|2573
5ND9|1|A|U|2574
*
5ND9|1|A|A|2588
5ND9|1|A|U|2589
5ND9|1|A|U|2590
5ND9|1|A|A|2591
5ND9|1|A|A|2592
5ND9|1|A|A|2593
5ND9|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L14