J3_5ND9_016
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 5ND9|1|a|U|731
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND9_016 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.2469
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5ND9|1|a|U|680
5ND9|1|a|G|681
*
5ND9|1|a|C|725
5ND9|1|a|A|726
5ND9|1|a|C|727
5ND9|1|a|C|728
5ND9|1|a|A|729
5ND9|1|a|G|730
5ND9|1|a|U|731
5ND9|1|a|G|732
5ND9|1|a|G|733
*
5ND9|1|a|C|740
5ND9|1|a|G|741
5ND9|1|a|A|742
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S18
- Chain u
- 30S ribosomal protein S21
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