J3_5ND9_021
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND9_021 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.2001
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5ND9|1|a|C|1075
5ND9|1|a|G|1076
5ND9|1|a|U|1077
5ND9|1|a|C|1078
5ND9|1|a|A|1079
5ND9|1|a|G|1080
*
5ND9|1|a|C|1119
5ND9|1|a|G|1120
5ND9|1|a|C|1121
5ND9|1|a|A|1122
5ND9|1|a|A|1123
5ND9|1|a|C|1124
5ND9|1|a|C|1125
*
5ND9|1|a|G|1198
5ND9|1|a|A|1199
5ND9|1|a|U|1200
5ND9|1|a|G|1201
5ND9|1|a|A|1202
5ND9|1|a|C|1203
5ND9|1|a|G|1204
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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