J3_5ND9_026

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND9_026 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1189

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5ND9|1|A|G|1468
5ND9|1|A|G|1469
5ND9|1|A|G|1470
5ND9|1|A|A|1471
5ND9|1|A|C|1472
5ND9|1|A|G|1473
*
5ND9|1|A|C|1611
5ND9|1|A|C|1612
*
5ND9|1|A|G|1615
5ND9|1|A|A|1616
5ND9|1|A|A|1617
5ND9|1|A|A|1618
5ND9|1|A|A|1619
5ND9|1|A|G|1620
5ND9|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2