J3_5NDG_033
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_033 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.117
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5NDG|1|5|U|829
5NDG|1|5|A|830
5NDG|1|5|G|831
*
5NDG|1|5|C|863
5NDG|1|5|G|864
5NDG|1|5|U|865
5NDG|1|5|A|866
5NDG|1|5|G|867
*
5NDG|1|5|U|892
5NDG|1|5|C|893
5NDG|1|5|G|894
5NDG|1|5|A|895
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain o4
- 60S ribosomal protein L34-A
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