J3_5NDG_039
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAC*GUAACU*AG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_039 not in the Motif Atlas
- Homologous match to J3_5TBW_011
- Geometric discrepancy: 0.1182
- The information below is about J3_5TBW_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25670.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDG|1|5|C|1631
5NDG|1|5|A|1632
5NDG|1|5|C|1633
*
5NDG|1|5|G|1640
5NDG|1|5|U|1641
5NDG|1|5|A|1642
5NDG|1|5|A|1643
5NDG|1|5|C|1644
5NDG|1|5|U|1645
*
5NDG|1|5|A|1810
5NDG|1|5|G|1811
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain n7
- 60S ribosomal protein L27-A
- Chain o4
- 60S ribosomal protein L34-A
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