J3_5NDG_048
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 5NDG|1|6|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_048 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.084
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDG|1|6|C|1037
5NDG|1|6|U|1038
5NDG|1|6|A|1039
*
5NDG|1|6|U|1079
5NDG|1|6|U|1080
5NDG|1|6|A|1081
5NDG|1|6|C|1082
5NDG|1|6|G|1083
*
5NDG|1|6|C|1090
5NDG|1|6|A|1091
5NDG|1|6|A|1092
5NDG|1|6|A|1093
5NDG|1|6|G|1094
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain d1
- 40S ribosomal protein S21-A
- Chain d2
- 40S ribosomal protein S22-A
- Chain d6
- 40S ribosomal protein S26-B
- Chain d7
- 40S ribosomal protein S27-A
- Chain s0
- 40S ribosomal protein S0-A
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