J3_5NDG_051
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCACC*GGGCCG
- Length
- 27 nucleotides
- Bulged bases
- 5NDG|1|6|G|1199, 5NDG|1|6|G|1201, 5NDG|1|6|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_051 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.2109
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5NDG|1|6|C|1180
5NDG|1|6|U|1181
5NDG|1|6|U|1182
5NDG|1|6|A|1183
5NDG|1|6|A|1184
5NDG|1|6|U|1185
5NDG|1|6|U|1186
5NDG|1|6|U|1187
*
5NDG|1|6|G|1198
5NDG|1|6|G|1199
5NDG|1|6|G|1200
5NDG|1|6|G|1201
5NDG|1|6|A|1202
5NDG|1|6|A|1203
5NDG|1|6|A|1204
5NDG|1|6|C|1205
5NDG|1|6|U|1206
5NDG|1|6|C|1207
5NDG|1|6|A|1208
5NDG|1|6|C|1209
5NDG|1|6|C|1210
*
5NDG|1|6|G|1453
5NDG|1|6|G|1454
5NDG|1|6|G|1455
5NDG|1|6|C|1456
5NDG|1|6|C|1457
5NDG|1|6|G|1458
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain c8
- 40S ribosomal protein S18-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
- Chain sM
- Suppressor protein STM1
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