J3_5NDG_055
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 5NDG|1|6|U|1413, 5NDG|1|6|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_055 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.0982
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDG|1|6|A|1336
5NDG|1|6|A|1337
5NDG|1|6|C|1338
*
5NDG|1|6|G|1386
5NDG|1|6|G|1387
5NDG|1|6|A|1388
5NDG|1|6|C|1389
*
5NDG|1|6|G|1412
5NDG|1|6|U|1413
5NDG|1|6|U|1414
5NDG|1|6|U|1415
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s5
- 40S ribosomal protein S5
- Chain sR
- Guanine nucleotide-binding protein subunit beta-like protein
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