J3_5NDJ_019

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

5NDJ|1|14|A|1351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NDJ_019 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0593

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5NDJ|1|14|C|1347
5NDJ|1|14|G|1348
5NDJ|1|14|U|1349
5NDJ|1|14|A|1350
5NDJ|1|14|A|1351
5NDJ|1|14|G|1352
*
5NDJ|1|14|C|1674
5NDJ|1|14|G|1675
5NDJ|1|14|G|1676
*
5NDJ|1|14|U|1689
5NDJ|1|14|C|1690
5NDJ|1|14|A|1691
5NDJ|1|14|G|1692

Current chains

Chain 14

23S ribosomal RNA

Nearby chains