J3_5NDJ_024
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5NDJ|1|14|A|2533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_024 not in the Motif Atlas
- Homologous match to J3_9DFE_017
- Geometric discrepancy: 0.0986
- The information below is about J3_9DFE_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|14|C|2532
5NDJ|1|14|A|2533
5NDJ|1|14|U|2534
5NDJ|1|14|C|2535
*
5NDJ|1|14|G|2560
5NDJ|1|14|U|2561
5NDJ|1|14|U|2562
*
5NDJ|1|14|A|2576
5NDJ|1|14|U|2577
5NDJ|1|14|U|2578
5NDJ|1|14|A|2579
5NDJ|1|14|A|2580
5NDJ|1|14|A|2581
5NDJ|1|14|G|2582
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L13
- Chain 25
- 50S ribosomal protein L14
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