J3_5NDJ_029
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5NDJ|1|1G|U|1352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_029 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1178
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5NDJ|1|1G|U|1301
5NDJ|1|1G|G|1302
*
5NDJ|1|1G|C|1346
5NDJ|1|1G|G|1347
5NDJ|1|1G|C|1348
5NDJ|1|1G|C|1349
5NDJ|1|1G|G|1350
5NDJ|1|1G|A|1351
5NDJ|1|1G|U|1352
5NDJ|1|1G|G|1353
5NDJ|1|1G|G|1354
*
5NDJ|1|1G|C|1361
5NDJ|1|1G|A|1362
5NDJ|1|1G|G|1363
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 2A
- 30S ribosomal protein S11
- Chain 52
- 30S ribosomal protein S6
- Chain 6A
- 30S ribosomal protein S15
- Chain 9A
- 30S ribosomal protein S18
- Chain Y4
- mRNA
Coloring options: