J3_5NDJ_032
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_032 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0936
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|1G|U|1566
5NDJ|1|1G|G|1567
5NDJ|1|1G|G|1568
5NDJ|1|1G|A|1569
*
5NDJ|1|1G|U|1862
5NDJ|1|1G|A|1863
5NDJ|1|1G|C|1864
*
5NDJ|1|1G|G|1964
5NDJ|1|1G|G|1965
5NDJ|1|1G|A|1966
5NDJ|1|1G|A|1967
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1B
- 30S ribosomal protein Thx
- Chain 4A
- 30S ribosomal protein S13
- Chain 82
- 30S ribosomal protein S9
- Chain V4
- Transfer RNA; tRNA
- Chain X4
- Transfer RNA; tRNA
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