J3_5NDJ_036
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_036 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1031
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|1G|C|1691
5NDJ|1|1G|G|1692
5NDJ|1|1G|U|1693
5NDJ|1|1G|C|1694
5NDJ|1|1G|A|1695
5NDJ|1|1G|G|1696
*
5NDJ|1|1G|C|1735
5NDJ|1|1G|G|1736
5NDJ|1|1G|C|1737
5NDJ|1|1G|A|1738
5NDJ|1|1G|A|1739
5NDJ|1|1G|C|1740
5NDJ|1|1G|C|1741
*
5NDJ|1|1G|G|1814
5NDJ|1|1G|A|1815
5NDJ|1|1G|C|1816
5NDJ|1|1G|G|1817
5NDJ|1|1G|A|1818
5NDJ|1|1G|C|1819
5NDJ|1|1G|G|1820
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 12
- 30S ribosomal protein S2
- Chain 1A
- 30S ribosomal protein S10
- Chain 22
- 30S ribosomal protein S3
- Chain 42
- 30S ribosomal protein S5
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 82
- 30S ribosomal protein S9
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