J3_5NDJ_057
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 5NDJ|1|13|G|1805, 5NDJ|1|13|A|1810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_057 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1898
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|13|C|1744
5NDJ|1|13|G|1745
5NDJ|1|13|C|1746
*
5NDJ|1|13|G|1783
5NDJ|1|13|G|1784
5NDJ|1|13|A|1785
5NDJ|1|13|C|1786
5NDJ|1|13|U|1787
5NDJ|1|13|G|1788
5NDJ|1|13|C|1789
*
5NDJ|1|13|G|1802
5NDJ|1|13|A|1803
5NDJ|1|13|G|1804
5NDJ|1|13|G|1805
5NDJ|1|13|A|1806
5NDJ|1|13|A|1807
5NDJ|1|13|G|1808
5NDJ|1|13|G|1809
5NDJ|1|13|A|1810
5NDJ|1|13|G|1811
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 1I
- 30S ribosomal protein S10
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
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