J3_5NDK_011
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 5NDK|1|13|A|1810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_011 not in the Motif Atlas
- Homologous match to J3_4LFB_008
- Geometric discrepancy: 0.1397
- The information below is about J3_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.5
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDK|1|13|C|1744
5NDK|1|13|G|1745
5NDK|1|13|C|1746
*
5NDK|1|13|G|1783
5NDK|1|13|G|1784
5NDK|1|13|A|1785
5NDK|1|13|C|1786
*
5NDK|1|13|G|1808
5NDK|1|13|G|1809
5NDK|1|13|A|1810
5NDK|1|13|G|1811
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 1I
- 30S ribosomal protein S10
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
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