J3_5NDK_031
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDK_031 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.1099
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|1G|C|1559
5NDK|1|1G|A|1560
5NDK|1|1G|A|1561
5NDK|1|1G|G|1562
*
5NDK|1|1G|C|1971
5NDK|1|1G|U|1972
5NDK|1|1G|A|1973
5NDK|1|1G|G|1974
5NDK|1|1G|U|1975
5NDK|1|1G|A|1976
5NDK|1|1G|A|1977
*
5NDK|1|1G|U|2000
5NDK|1|1G|G|2001
5NDK|1|1G|A|2002
5NDK|1|1G|A|2003
5NDK|1|1G|U|2004
5NDK|1|1G|A|2005
5NDK|1|1G|C|2006
5NDK|1|1G|G|2007
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 62
- 30S ribosomal protein S7
- Chain 82
- 30S ribosomal protein S9
- Chain V4
- Transfer RNA; tRNA
Coloring options: