J3_5NDV_005
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 5NDV|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDV_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.0809
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5NDV|1|1|A|828
5NDV|1|1|U|829
5NDV|1|1|A|830
5NDV|1|1|G|831
*
5NDV|1|1|C|863
5NDV|1|1|G|864
5NDV|1|1|U|865
5NDV|1|1|A|866
5NDV|1|1|G|867
*
5NDV|1|1|U|892
5NDV|1|1|C|893
5NDV|1|1|G|894
5NDV|1|1|A|895
5NDV|1|1|A|896
5NDV|1|1|U|897
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain M9
- 60S ribosomal protein L19-A
- Chain O4
- 60S ribosomal protein L34-A
- Chain Q3
- 60S ribosomal protein L43-A
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