J3_5NDV_022
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5NDV|1|2|G|1199, 5NDV|1|2|G|1201, 5NDV|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDV_022 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.0777
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NDV|1|2|C|1180
5NDV|1|2|U|1181
5NDV|1|2|U|1182
5NDV|1|2|A|1183
5NDV|1|2|A|1184
5NDV|1|2|U|1185
5NDV|1|2|U|1186
5NDV|1|2|U|1187
*
5NDV|1|2|G|1198
5NDV|1|2|G|1199
5NDV|1|2|G|1200
5NDV|1|2|G|1201
5NDV|1|2|A|1202
5NDV|1|2|A|1203
5NDV|1|2|A|1204
5NDV|1|2|C|1205
5NDV|1|2|U|1206
5NDV|1|2|C|1207
5NDV|1|2|A|1208
5NDV|1|2|C|1209
*
5NDV|1|2|G|1454
5NDV|1|2|G|1455
5NDV|1|2|C|1456
5NDV|1|2|C|1457
5NDV|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C5
- 40S ribosomal protein S15
- Chain C8
- 40S ribosomal protein S18-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain SM
- Suppressor protein STM1
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