J3_5NDV_039
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDV_039 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1302
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NDV|1|5|A|2432
5NDV|1|5|U|2433
5NDV|1|5|U|2434
5NDV|1|5|G|2435
*
5NDV|1|5|C|2512
5NDV|1|5|U|2513
5NDV|1|5|U|2514
5NDV|1|5|A|2515
5NDV|1|5|U|2516
5NDV|1|5|U|2517
*
5NDV|1|5|A|2590
5NDV|1|5|A|2591
5NDV|1|5|G|2592
5NDV|1|5|A|2593
5NDV|1|5|C|2594
5NDV|1|5|A|2595
5NDV|1|5|U|2596
5NDV|1|5|U|2597
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o6
- 60S ribosomal protein L36-A
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