J3_5NDV_042
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 5NDV|1|5|A|2887
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDV_042 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.0608
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5NDV|1|5|U|2886
5NDV|1|5|A|2887
5NDV|1|5|U|2888
5NDV|1|5|C|2889
*
5NDV|1|5|G|2914
5NDV|1|5|U|2915
5NDV|1|5|U|2916
*
5NDV|1|5|A|2930
5NDV|1|5|C|2931
5NDV|1|5|U|2932
5NDV|1|5|A|2933
5NDV|1|5|A|2934
5NDV|1|5|U|2935
5NDV|1|5|A|2936
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain m6
- 60S ribosomal protein L16-A
- Chain n3
- 60S ribosomal protein L23-A
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