J3_8P9A_063

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8P9A|1|AR|A|2887, 8P9A|1|AR|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|U|2886
8P9A|1|AR|A|2887
8P9A|1|AR|U|2888
8P9A|1|AR|C|2889
*
8P9A|1|AR|G|2914
8P9A|1|AR|U|2915
8P9A|1|AR|U|2916
*
8P9A|1|AR|A|2930
8P9A|1|AR|C|2931
8P9A|1|AR|U|2932
8P9A|1|AR|A|2933
8P9A|1|AR|A|2934
8P9A|1|AR|U|2935
8P9A|1|AR|A|2936

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CQ

60S ribosomal protein L16-A

Chain CX

60S ribosomal protein L23-A