J3_5NDW_002
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDW_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.0665
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5NDW|1|1|A|369
5NDW|1|1|U|370
5NDW|1|1|G|371
5NDW|1|1|A|372
5NDW|1|1|A|373
5NDW|1|1|A|374
5NDW|1|1|A|375
5NDW|1|1|G|376
*
5NDW|1|1|C|403
5NDW|1|1|G|404
*
5NDW|1|4|C|19
5NDW|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain N6
- 60S ribosomal protein L26-A
- Chain O9
- 60S ribosomal protein L39
Coloring options: