J3_5NG8_007

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5NG8|1|AA|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_007 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.1465

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5NG8|1|AA|C|1342
5NG8|1|AA|U|1343
5NG8|1|AA|A|1344
5NG8|1|AA|A|1345
5NG8|1|AA|G|1346
*
5NG8|1|AA|C|1649
5NG8|1|AA|G|1650
5NG8|1|AA|C|1651
5NG8|1|AA|A|1652
5NG8|1|AA|A|1653
5NG8|1|AA|A|1654
5NG8|1|AA|C|1655
*
5NG8|1|AA|G|1664
5NG8|1|AA|U|1665
5NG8|1|AA|A|1666
5NG8|1|AA|G|1667

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34