J3_5NG8_046
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NG8_046 not in the Motif Atlas
- Geometric match to J3_5J7L_008
- Geometric discrepancy: 0.159
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NG8|1|Ba|C|1074
5NG8|1|Ba|G|1075
5NG8|1|Ba|U|1076
5NG8|1|Ba|C|1077
5NG8|1|Ba|A|1078
5NG8|1|Ba|G|1079
*
5NG8|1|Ba|C|1118
5NG8|1|Ba|G|1119
5NG8|1|Ba|C|1120
5NG8|1|Ba|A|1121
5NG8|1|Ba|A|1122
5NG8|1|Ba|C|1123
5NG8|1|Ba|C|1124
*
5NG8|1|Ba|G|1197
5NG8|1|Ba|A|1198
5NG8|1|Ba|U|1199
5NG8|1|Ba|G|1200
5NG8|1|Ba|A|1201
5NG8|1|Ba|C|1202
5NG8|1|Ba|G|1203
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bb
- 30S ribosomal protein S2
- Chain Bc
- 30S ribosomal protein S3
- Chain Be
- 30S ribosomal protein S5
- Chain Bg
- 30S ribosomal protein S7
- Chain Bi
- 30S ribosomal protein S9
- Chain Bj
- 30S ribosomal protein S10
- Chain Bn
- 30S ribosomal protein S14 type Z
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