J3_5NG8_050
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5NG8|1|AA|U|494, 5NG8|1|AA|C|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NG8_050 not in the Motif Atlas
- Geometric match to J3_4WF9_012
- Geometric discrepancy: 0.0871
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5NG8|1|AA|C|32
5NG8|1|AA|U|33
5NG8|1|AA|U|34
5NG8|1|AA|G|35
*
5NG8|1|AA|C|491
5NG8|1|AA|G|492
5NG8|1|AA|A|493
5NG8|1|AA|U|494
5NG8|1|AA|A|495
5NG8|1|AA|G|496
5NG8|1|AA|U|497
5NG8|1|AA|G|498
5NG8|1|AA|A|499
5NG8|1|AA|A|500
5NG8|1|AA|C|501
5NG8|1|AA|C|502
5NG8|1|AA|A|503
5NG8|1|AA|G|504
5NG8|1|AA|U|505
5NG8|1|AA|A|506
5NG8|1|AA|C|507
*
5NG8|1|AA|G|514
5NG8|1|AA|G|515
5NG8|1|AA|A|516
5NG8|1|AA|A|517
5NG8|1|AA|A|518
5NG8|1|AA|G|519
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L34
- Chain AE
- 50S ribosomal protein L4
- Chain AO
- 50S ribosomal protein L20
- Chain AR
- 50S ribosomal protein L23
Coloring options: