J3_5NG8_056
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5NG8|1|Aa|U|661
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NG8_056 not in the Motif Atlas
- Geometric match to J3_4LFB_015
- Geometric discrepancy: 0.1082
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NG8|1|Aa|C|594
5NG8|1|Aa|G|595
5NG8|1|Aa|G|596
*
5NG8|1|Aa|C|659
5NG8|1|Aa|U|660
5NG8|1|Aa|U|661
5NG8|1|Aa|G|662
5NG8|1|Aa|A|663
*
5NG8|1|Aa|U|759
5NG8|1|Aa|G|760
5NG8|1|Aa|A|761
5NG8|1|Aa|C|762
5NG8|1|Aa|G|763
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ah
- 30S ribosomal protein S8
- Chain Al
- 30S ribosomal protein S12
- Chain Ao
- 30S ribosomal protein S15
- Chain Aq
- 30S ribosomal protein S17
Coloring options: