J3_5NG8_061

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

5NG8|1|BA|U|549, 5NG8|1|BA|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_061 not in the Motif Atlas

Geometric match to J3_4WF9_011

Geometric discrepancy: 0.0798

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

5NG8|1|BA|G|30
5NG8|1|BA|C|31
*
5NG8|1|BA|G|520
5NG8|1|BA|U|521
5NG8|1|BA|G|522
5NG8|1|BA|A|523
5NG8|1|BA|A|524
5NG8|1|BA|A|525
5NG8|1|BA|A|526
5NG8|1|BA|G|527
5NG8|1|BA|C|528
5NG8|1|BA|A|529
5NG8|1|BA|C|530
*
5NG8|1|BA|G|541
5NG8|1|BA|A|542
5NG8|1|BA|G|543
5NG8|1|BA|U|544
5NG8|1|BA|G|545
5NG8|1|BA|A|546
5NG8|1|BA|A|547
5NG8|1|BA|A|548
5NG8|1|BA|U|549
5NG8|1|BA|A|550
5NG8|1|BA|G|551
5NG8|1|BA|A|552
5NG8|1|BA|A|553
5NG8|1|BA|C|554
5NG8|1|BA|C|555

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24