J3_5NG8_069

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

5NG8|1|Ba|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_069 not in the Motif Atlas

Geometric match to J3_6CZR_063

Geometric discrepancy: 0.2469

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

5NG8|1|Ba|C|999
5NG8|1|Ba|U|1000
5NG8|1|Ba|U|1001
5NG8|1|Ba|G|1002
5NG8|1|Ba|A|1003
5NG8|1|Ba|C|1004
5NG8|1|Ba|A|1005
5NG8|1|Ba|U|1006
*
5NG8|1|Ba|A|1055
5NG8|1|Ba|C|1056
5NG8|1|Ba|A|1057
5NG8|1|Ba|G|1058
*
5NG8|1|Ba|C|1220
5NG8|1|Ba|U|1221
5NG8|1|Ba|U|1222
5NG8|1|Ba|A|1223
5NG8|1|Ba|U|1224
5NG8|1|Ba|G|1225

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bn

30S ribosomal protein S14 type Z