J3_5NGM_002

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAUAUGC*GAUUU

Length

14 nucleotides

Bulged bases

5NGM|1|AA|U|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_002 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1297

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|A|56
5NGM|1|AA|C|57
*
5NGM|1|AA|G|70
5NGM|1|AA|A|71
5NGM|1|AA|U|72
5NGM|1|AA|A|73
5NGM|1|AA|U|74
5NGM|1|AA|G|75
5NGM|1|AA|C|76
*
5NGM|1|AA|G|109
5NGM|1|AA|A|110
5NGM|1|AA|U|111
5NGM|1|AA|U|112
5NGM|1|AA|U|113

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AR

50S ribosomal protein L23

Chain AW

50S ribosomal protein L29