J3_5NGM_003

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

5NGM|1|AA|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1871

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|AA|C|272
5NGM|1|AA|A|273
5NGM|1|AA|A|274
5NGM|1|AA|A|275
5NGM|1|AA|C|276
*
5NGM|1|AA|G|295
5NGM|1|AA|G|296
5NGM|1|AA|G|297
5NGM|1|AA|U|298
5NGM|1|AA|U|299
5NGM|1|AA|G|300
5NGM|1|AA|U|301
5NGM|1|AA|A|302
*
5NGM|1|AA|U|415
5NGM|1|AA|G|416

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains