J3_5NGM_006

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.0933

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5NGM|1|AA|C|1335
5NGM|1|AA|G|1336
5NGM|1|AA|A|1337
5NGM|1|AA|U|1338
5NGM|1|AA|U|1339
5NGM|1|AA|G|1340
*
5NGM|1|AA|C|1669
5NGM|1|AA|A|1670
5NGM|1|AA|A|1671
*
5NGM|1|AA|U|1683
5NGM|1|AA|A|1684
5NGM|1|AA|A|1685
5NGM|1|AA|G|1686

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains