J3_5NGM_012

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUUAAU*AAUCG

Length

13 nucleotides

Bulged bases

5NGM|1|AA|U|2853, 5NGM|1|AA|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NGM_012 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.1953

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|AA|C|2834
5NGM|1|AA|C|2835
*
5NGM|1|AA|G|2851
5NGM|1|AA|U|2852
5NGM|1|AA|U|2853
5NGM|1|AA|A|2854
5NGM|1|AA|A|2855
5NGM|1|AA|U|2856
*
5NGM|1|AA|A|2902
5NGM|1|AA|A|2903
5NGM|1|AA|U|2904
5NGM|1|AA|C|2905
5NGM|1|AA|G|2906

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AL

50S ribosomal protein L17

Chain AZ

50S ribosomal protein L32