J3_5NGM_018

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|C|945
5NGM|1|Aa|A|946
5NGM|1|Aa|A|947
5NGM|1|Aa|G|948
*
5NGM|1|Aa|C|1354
5NGM|1|Aa|U|1355
5NGM|1|Aa|A|1356
5NGM|1|Aa|G|1357
5NGM|1|Aa|U|1358
5NGM|1|Aa|A|1359
5NGM|1|Aa|A|1360
*
5NGM|1|Aa|U|1382
5NGM|1|Aa|G|1383
5NGM|1|Aa|A|1384
5NGM|1|Aa|A|1385
5NGM|1|Aa|U|1386
5NGM|1|Aa|A|1387
5NGM|1|Aa|C|1388
5NGM|1|Aa|G|1389

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

30S ribosomal protein S7

Chain Ai

30S ribosomal protein S9