J3_5NGM_020
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5NGM|1|Aa|A|984, 5NGM|1|Aa|G|985, 5NGM|1|Aa|A|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_020 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0977
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|Aa|U|964
5NGM|1|Aa|U|965
5NGM|1|Aa|U|966
5NGM|1|Aa|A|967
5NGM|1|Aa|A|968
5NGM|1|Aa|U|969
5NGM|1|Aa|U|970
5NGM|1|Aa|C|971
*
5NGM|1|Aa|G|982
5NGM|1|Aa|A|983
5NGM|1|Aa|A|984
5NGM|1|Aa|G|985
5NGM|1|Aa|A|986
5NGM|1|Aa|A|987
5NGM|1|Aa|C|988
5NGM|1|Aa|C|989
5NGM|1|Aa|U|990
5NGM|1|Aa|U|991
5NGM|1|Aa|A|992
5NGM|1|Aa|C|993
*
5NGM|1|Aa|G|1231
5NGM|1|Aa|G|1232
5NGM|1|Aa|C|1233
5NGM|1|Aa|U|1234
5NGM|1|Aa|A|1235
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Aj
- 30S ribosomal protein S10
- Chain Am
- 30S ribosomal protein S13
- Chain An
- 30S ribosomal protein S14 type Z
- Chain As
- 30S ribosomal protein S19
- Chain Av
- Ribosome hibernation promoting factor
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