J3_5NGM_029
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUC*GACUUAGUGAUCC*GCUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 5NGM|1|AA|U|2417, 5NGM|1|AA|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NGM_029 not in the Motif Atlas
- Homologous match to J3_4WF9_019
- Geometric discrepancy: 0.47
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NGM|1|AA|G|2309
5NGM|1|AA|C|2310
5NGM|1|AA|U|2311
5NGM|1|AA|C|2312
*
5NGM|1|AA|G|2410
5NGM|1|AA|A|2411
5NGM|1|AA|C|2412
5NGM|1|AA|U|2413
5NGM|1|AA|U|2414
5NGM|1|AA|A|2415
5NGM|1|AA|G|2416
5NGM|1|AA|U|2417
5NGM|1|AA|G|2418
5NGM|1|AA|A|2419
5NGM|1|AA|U|2420
5NGM|1|AA|C|2421
5NGM|1|AA|C|2422
*
5NGM|1|AA|G|2448
5NGM|1|AA|C|2449
5NGM|1|AA|U|2450
5NGM|1|AA|C|2451
5NGM|1|AA|A|2452
5NGM|1|AA|A|2453
5NGM|1|AA|C|2454
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L33
- Chain A3
- 50S ribosomal protein L35
- Chain AJ
- 50S ribosomal protein L15
- Chain AU
- 50S ribosomal protein L27
Coloring options: