J3_5NGM_031

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAGACGGUCUUGCUGUCAC

Length

35 nucleotides

Bulged bases

5NGM|1|Aa|U|183, 5NGM|1|Aa|A|211, 5NGM|1|Aa|U|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|G|142
5NGM|1|Aa|A|143
5NGM|1|Aa|C|144
*
5NGM|1|Aa|G|178
5NGM|1|Aa|A|179
5NGM|1|Aa|U|180
5NGM|1|Aa|A|181
5NGM|1|Aa|A|182
5NGM|1|Aa|U|183
5NGM|1|Aa|A|184
5NGM|1|Aa|U|185
*
5NGM|1|Aa|A|206
5NGM|1|Aa|G|207
5NGM|1|Aa|U|208
5NGM|1|Aa|G|209
5NGM|1|Aa|A|210
5NGM|1|Aa|A|211
5NGM|1|Aa|A|212
5NGM|1|Aa|G|213
5NGM|1|Aa|A|214
5NGM|1|Aa|C|215
5NGM|1|Aa|G|216
5NGM|1|Aa|G|217
5NGM|1|Aa|U|218
5NGM|1|Aa|C|219
5NGM|1|Aa|U|220
5NGM|1|Aa|U|221
5NGM|1|Aa|G|222
5NGM|1|Aa|C|223
5NGM|1|Aa|U|224
5NGM|1|Aa|G|225
5NGM|1|Aa|U|226
5NGM|1|Aa|C|227
5NGM|1|Aa|A|228
5NGM|1|Aa|C|229

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20