J3_5NGM_034

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGACAACU*AGCCUUCC*GGACAA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|U|1010
5NGM|1|Aa|U|1011
5NGM|1|Aa|G|1012
5NGM|1|Aa|A|1013
5NGM|1|Aa|C|1014
5NGM|1|Aa|A|1015
5NGM|1|Aa|A|1016
5NGM|1|Aa|C|1017
5NGM|1|Aa|U|1018
*
5NGM|1|Aa|A|1029
5NGM|1|Aa|G|1030
5NGM|1|Aa|C|1031
5NGM|1|Aa|C|1032
5NGM|1|Aa|U|1033
5NGM|1|Aa|U|1034
5NGM|1|Aa|C|1035
5NGM|1|Aa|C|1036
*
5NGM|1|Aa|G|1045
5NGM|1|Aa|G|1046
5NGM|1|Aa|A|1047
5NGM|1|Aa|C|1048
5NGM|1|Aa|A|1049
5NGM|1|Aa|A|1050

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ac

30S ribosomal protein S3