J3_5NGM_036

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CUCAGUUCGGAUU*AUGAAGCUG

Length

27 nucleotides

Bulged bases

5NGM|1|Aa|U|1250, 5NGM|1|Aa|A|1309, 5NGM|1|Aa|U|1311, 5NGM|1|Aa|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|C|1247
5NGM|1|Aa|A|1248
5NGM|1|Aa|A|1249
5NGM|1|Aa|U|1250
5NGM|1|Aa|G|1251
*
5NGM|1|Aa|C|1306
5NGM|1|Aa|U|1307
5NGM|1|Aa|C|1308
5NGM|1|Aa|A|1309
5NGM|1|Aa|G|1310
5NGM|1|Aa|U|1311
5NGM|1|Aa|U|1312
5NGM|1|Aa|C|1313
5NGM|1|Aa|G|1314
5NGM|1|Aa|G|1315
5NGM|1|Aa|A|1316
5NGM|1|Aa|U|1317
5NGM|1|Aa|U|1318
*
5NGM|1|Aa|A|1339
5NGM|1|Aa|U|1340
5NGM|1|Aa|G|1341
5NGM|1|Aa|A|1342
5NGM|1|Aa|A|1343
5NGM|1|Aa|G|1344
5NGM|1|Aa|C|1345
5NGM|1|Aa|U|1346
5NGM|1|Aa|G|1347

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

30S ribosomal protein S7

Chain Am

30S ribosomal protein S13