J3_5NJT_010
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGA*UGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 5NJT|1|A|U|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_010 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.232
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|A|U|1126
5NJT|1|A|G|1127
5NJT|1|A|A|1128
*
5NJT|1|A|U|1164
5NJT|1|A|G|1165
5NJT|1|A|A|1166
5NJT|1|A|C|1167
*
5NJT|1|A|G|1190
5NJT|1|A|G|1191
5NJT|1|A|U|1192
5NJT|1|A|G|1193
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain C
- 30S ribosomal protein S3
- Chain I
- 30S ribosomal protein S9
- Chain N
- 30S ribosomal protein S14
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