J3_5NJT_013
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACGGGACGAACA*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_013 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.3287
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5NJT|1|U|A|56
5NJT|1|U|C|57
5NJT|1|U|G|58
5NJT|1|U|G|59
5NJT|1|U|G|60
5NJT|1|U|A|61
5NJT|1|U|C|62
5NJT|1|U|G|63
5NJT|1|U|A|64
5NJT|1|U|A|65
5NJT|1|U|C|66
5NJT|1|U|A|67
*
5NJT|1|U|U|74
5NJT|1|U|G|75
5NJT|1|U|C|76
*
5NJT|1|U|G|109
5NJT|1|U|A|110
5NJT|1|U|U|111
5NJT|1|U|U|112
5NJT|1|U|U|113
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
- Chain v
- 50S ribosomal protein L29
Coloring options: