J3_5NJT_015
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5NJT|1|U|U|733, 5NJT|1|U|G|839, 5NJT|1|U|A|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_015 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1644
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NJT|1|U|U|730
5NJT|1|U|G|731
5NJT|1|U|A|732
5NJT|1|U|U|733
5NJT|1|U|C|734
5NJT|1|U|U|735
5NJT|1|U|A|736
*
5NJT|1|U|U|820
5NJT|1|U|A|821
5NJT|1|U|G|822
*
5NJT|1|U|C|838
5NJT|1|U|G|839
5NJT|1|U|A|840
5NJT|1|U|A|841
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain Y
- 50S ribosomal protein L4
- Chain r
- 50S ribosomal protein L34
Coloring options: