J3_5NJT_016

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_016 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1112

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5NJT|1|U|C|745
5NJT|1|U|A|746
5NJT|1|U|G|747
*
5NJT|1|U|C|779
5NJT|1|U|G|780
5NJT|1|U|A|781
5NJT|1|U|A|782
5NJT|1|U|C|783
*
5NJT|1|U|G|807
5NJT|1|U|A|808
5NJT|1|U|U|809
5NJT|1|U|G|810

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L2