J3_5NJT_026

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUAG*CGC*GACG

Length

13 nucleotides

Bulged bases

5NJT|1|V|G|10, 5NJT|1|V|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NJT|1|V|C|9
5NJT|1|V|G|10
5NJT|1|V|A|11
5NJT|1|V|U|12
5NJT|1|V|A|13
5NJT|1|V|G|14
*
5NJT|1|V|C|66
5NJT|1|V|G|67
5NJT|1|V|C|68
*
5NJT|1|V|G|104
5NJT|1|V|A|105
5NJT|1|V|C|106
5NJT|1|V|G|107

Current chains

Chain V

5S ribosomal RNA

Nearby chains

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain h

50S ribosomal protein L18

Chain o

50S ribosomal protein L27