J3_5NJT_029

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

5NJT|1|A|U|1221, 5NJT|1|A|U|1223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2118

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5NJT|1|A|C|1000
5NJT|1|A|U|1001
5NJT|1|A|U|1002
5NJT|1|A|G|1003
5NJT|1|A|A|1004
5NJT|1|A|C|1005
5NJT|1|A|A|1006
5NJT|1|A|U|1007
*
5NJT|1|A|A|1054
5NJT|1|A|C|1055
5NJT|1|A|A|1056
5NJT|1|A|G|1057
*
5NJT|1|A|C|1219
5NJT|1|A|U|1220
5NJT|1|A|U|1221
5NJT|1|A|A|1222
5NJT|1|A|U|1223
5NJT|1|A|G|1224

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14