J3_5NJT_036

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NJT_036 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.1303

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5NJT|1|U|G|1470
5NJT|1|U|G|1471
5NJT|1|U|G|1472
5NJT|1|U|A|1473
5NJT|1|U|C|1474
5NJT|1|U|G|1475
*
5NJT|1|U|C|1612
5NJT|1|U|C|1613
*
5NJT|1|U|G|1616
5NJT|1|U|A|1617
5NJT|1|U|A|1618
5NJT|1|U|A|1619
5NJT|1|U|A|1620
5NJT|1|U|G|1621
5NJT|1|U|C|1622

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L2