J3_5NJT_038
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5NJT|1|U|A|2417, 5NJT|1|U|U|2419, 5NJT|1|U|A|2455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NJT_038 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1501
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|U|G|2311
5NJT|1|U|C|2312
5NJT|1|U|C|2313
*
5NJT|1|U|G|2413
5NJT|1|U|C|2414
5NJT|1|U|U|2415
5NJT|1|U|U|2416
5NJT|1|U|A|2417
5NJT|1|U|G|2418
5NJT|1|U|U|2419
5NJT|1|U|G|2420
5NJT|1|U|A|2421
5NJT|1|U|U|2422
5NJT|1|U|C|2423
5NJT|1|U|C|2424
*
5NJT|1|U|G|2450
5NJT|1|U|C|2451
5NJT|1|U|U|2452
5NJT|1|U|C|2453
5NJT|1|U|A|2454
5NJT|1|U|A|2455
5NJT|1|U|C|2456
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L15
- Chain o
- 50S ribosomal protein L27
- Chain q
- 50S ribosomal protein L33 1
- Chain s
- 50S ribosomal protein L35
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