J3_5NO2_015
3D structure
- PDB id
- 5NO2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NO2_015 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.1148
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NO2|1|A|C|936
5NO2|1|A|A|937
5NO2|1|A|A|938
5NO2|1|A|G|939
*
5NO2|1|A|C|1344
5NO2|1|A|U|1345
5NO2|1|A|A|1346
5NO2|1|A|G|1347
5NO2|1|A|U|1348
5NO2|1|A|A|1349
5NO2|1|A|A|1350
*
5NO2|1|A|U|1372
5NO2|1|A|G|1373
5NO2|1|A|A|1374
5NO2|1|A|A|1375
5NO2|1|A|U|1376
5NO2|1|A|A|1377
5NO2|1|A|C|1378
5NO2|1|A|G|1379
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: