J3_5NO3_016

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5NO3|1|A|U|1212, 5NO3|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NO3_016 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1527

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5NO3|1|A|C|990
5NO3|1|A|U|991
5NO3|1|A|U|992
5NO3|1|A|G|993
5NO3|1|A|A|994
5NO3|1|A|C|995
5NO3|1|A|A|996
5NO3|1|A|U|997
*
5NO3|1|A|A|1044
5NO3|1|A|C|1045
5NO3|1|A|A|1046
5NO3|1|A|G|1047
*
5NO3|1|A|C|1210
5NO3|1|A|U|1211
5NO3|1|A|U|1212
5NO3|1|A|A|1213
5NO3|1|A|C|1214
5NO3|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14