J3_5NO4_008

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGAAGUUU*GAAUGUGC*GGAACC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NO4|1|A|G|1002
5NO4|1|A|G|1003
5NO4|1|A|A|1004
5NO4|1|A|A|1005
5NO4|1|A|G|1006
5NO4|1|A|U|1007
5NO4|1|A|U|1008
5NO4|1|A|U|1009
*
5NO4|1|A|G|1020
5NO4|1|A|A|1021
5NO4|1|A|A|1022
5NO4|1|A|U|1023
5NO4|1|A|G|1024
5NO4|1|A|U|1025
5NO4|1|A|G|1026
5NO4|1|A|C|1027
*
5NO4|1|A|G|1033
5NO4|1|A|G|1034
5NO4|1|A|A|1035
5NO4|1|A|A|1036
5NO4|1|A|C|1037
5NO4|1|A|C|1038

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14